#pragma once
#ifndef PARSERS_H
#define PARSERS_H
#include "Junctions.h"
#include "chromosomeNTdata.h"
#include "Filename.h"
#include <iostream>
#include <fstream>
#include <vector>
using namespace std;

int getLowCoverageRegionFromWig(const char* wigFile,
                                vector< pair<int, int> >& ocean, int coverageThreshold);
int getJunctionsFromBED(const char* filename, CJunctions& js, const char* pcaSeq = NULL);


#endif